{"id":377,"date":"2018-03-11T17:59:13","date_gmt":"2018-03-11T16:59:13","guid":{"rendered":"https:\/\/kszyh.kisim.eu.org\/?p=377"},"modified":"2018-03-11T17:59:13","modified_gmt":"2018-03-11T16:59:13","slug":"deal-ii-on-prometheus","status":"publish","type":"post","link":"https:\/\/kszyh.kisim.eu.org\/?p=377","title":{"rendered":"deal.ii on Prometheus"},"content":{"rendered":"<h4>p4est<\/h4>\n<pre class=\"wrap:true lang:default decode:true\">wget http:\/\/p4est.github.io\/release\/p4est-1.1.tar.gz\r\ntar xf http:\/\/p4est.github.io\/release\/p4est-1.1.tar.gz\r\ncd p4est-1.1\r\n\r\nusername=`whoami`\r\nexport CC=mpiicc\r\nexport CXX=mpiicpc\r\nexport FC=mpiifort\r\nexport F77=mpiifort\r\nexport LIBS=\"-lmkl_intel_lp64 -lmkl_core -lmkl_sequential\"\r\nmodule load plgrid\/libs\/boost\/1.66.0\r\n\r\n.\/configure --prefix=\/net\/people\/$username\/usr\/ --enable-mpi\r\nmake\r\nmake install<\/pre>\n<h4>petsc<\/h4>\n<pre class=\"wrap:true lang:default decode:true\">wget http:\/\/ftp.mcs.anl.gov\/pub\/petsc\/release-snapshots\/petsc-lite-3.8.3.tar.gz\r\ntar xf petsc-lite-3.8.3.tar.gz\r\ncd petsc-3.8.3\r\n\r\nusername=`whoami`\r\nmodule load plgrid\/libs\/boost\/1.66.0\r\nexport PETSC_DIR=`pwd`\r\nexport PETSC_ARCH=x86_64\r\n\r\n.\/configure \\\r\n--with-shared=1 \\\r\n--with-x=0 \\\r\n--with-mpi=1 \\\r\n--download-hypre=1 \\\r\n--with-debugging=0 \\\r\n--prefix=\/net\/people\/$username\/usr \\\r\n--with-blas-lapack-dir=\/net\/software\/local\/intel\/compilers_and_libraries_2018.0.128\/linux\/mkl\/lib\/intel64_lin \\\r\nCOPTFLAGS='-O3 -march=native -mtune=native' \\\r\nCXXOPTFLAGS='-O3 -march=native -mtune=native' \\\r\nFOPTFLAGS='-O3 -march=native -mtune=native'\r\n\r\nmake\r\nmake install<\/pre>\n<h4>metis<\/h4>\n<pre class=\"wrap:true lang:default decode:true\">wget http:\/\/glaros.dtc.umn.edu\/gkhome\/fetch\/sw\/metis\/metis-5.1.0.tar.gz\r\ntar xf metis-5.1.0.tar.gz\r\ncd metis-5.1.0\r\n\r\nmodule load tools\/cmake\/3.10.2\r\nmodule load plgrid\/libs\/boost\/1.66.0\r\n\r\nusername=`whoami`\r\nmake config shared=1 prefix=\/net\/people\/$username\/usr\/ cc=\/net\/software\/local\/software\/GCC\/6.4.0\/bin\/gcc\r\nmake\r\nmake install<\/pre>\n<h4>deal.ii<\/h4>\n<pre class=\"wrap:true lang:default decode:true \">wget https:\/\/github.com\/dealii\/dealii\/releases\/download\/v8.5.1\/dealii-8.5.1.tar.gz\r\ntar xf dealii-8.5.1.tar.gz\r\nmkdir dealii-8.5.1-build\r\n\r\nmodule load tools\/cmake\/3.10.2\r\nmodule load plgrid\/libs\/boost\/1.66.0\r\n\r\nusername=`whoami`\r\nexport PATH=\/net\/people\/$username\/usr\/bin:$PATH\r\nexport LD_LIBRARY_PATH=\/net\/people\/$username\/usr\/lib:$LD_LIBRARY_PATH\r\n\r\ncmake \\\r\n..\/dealii-8.5.1 \\\r\n-DCMAKE_INSTALL_PREFIX=\/net\/people\/$username\/usr\/ \\\r\n-DDEAL_II_WITH_MPI=ON \\\r\n-DDEAL_II_WITH_PETSC=ON \\\r\n-DCMAKE_BUILD_TYPE=Release \\\r\n-DDEAL_II_COMPONENT_EXAMPLES=OFF\r\nmake\r\nmake install<\/pre>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>p4est wget http:\/\/p4est.github.io\/release\/p4est-1.1.tar.gz tar xf http:\/\/p4est.github.io\/release\/p4est-1.1.tar.gz cd p4est-1.1 username=`whoami` export CC=mpiicc export CXX=mpiicpc export FC=mpiifort export F77=mpiifort export LIBS=&#8221;-lmkl_intel_lp64 -lmkl_core -lmkl_sequential&#8221; module load plgrid\/libs\/boost\/1.66.0 .\/configure &#8211;prefix=\/net\/people\/$username\/usr\/ &#8211;enable-mpi make make install petsc wget http:\/\/ftp.mcs.anl.gov\/pub\/petsc\/release-snapshots\/petsc-lite-3.8.3.tar.gz tar xf petsc-lite-3.8.3.tar.gz cd petsc-3.8.3 username=`whoami` module load plgrid\/libs\/boost\/1.66.0 export PETSC_DIR=`pwd` export PETSC_ARCH=x86_64 .\/configure \\ &#8211;with-shared=1 \\&#8230; <a class=\"continue-reading-link\" href=\"https:\/\/kszyh.kisim.eu.org\/?p=377\"> Continue reading <span class=\"meta-nav\">&rarr; <\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[23],"tags":[40,6,54,105],"class_list":["post-377","post","type-post","status-publish","format-standard","hentry","category-linux","tag-deal-ii","tag-kompilacja","tag-mpi","tag-prometheus"],"_links":{"self":[{"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=\/wp\/v2\/posts\/377","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=377"}],"version-history":[{"count":1,"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=\/wp\/v2\/posts\/377\/revisions"}],"predecessor-version":[{"id":378,"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=\/wp\/v2\/posts\/377\/revisions\/378"}],"wp:attachment":[{"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=377"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=377"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/kszyh.kisim.eu.org\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=377"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}